PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr3P27560_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LSD
Protein Properties Length: 207aa    MW: 22156.2 Da    PI: 8.2844
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr3P27560_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD138.61.7e-1291115125
                zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                            C+gCr+lL YP+GA+sV+Ca+C +V
  GSMUA_Achr3P27560_001  91 CSGCRNLLLYPLGATSVCCAVCSAV 115
                            **********************998 PP

2zf-LSD144.13.3e-14130154125
                zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                            CggC+tlL++ rGA+sV+C++C+tV
  GSMUA_Achr3P27560_001 130 CGGCHTLLMFIRGATSVQCSCCHTV 154
                            ************************9 PP

3zf-LSD136.48.3e-12168192125
                zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                            Cg+C+ lL+Y +GA+sV+Ca+C +V
  GSMUA_Achr3P27560_001 168 CGSCHMLLMYQYGARSVKCAVCSFV 192
                            **********************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.4E-1188118IPR005735Zinc finger, LSD1-type
SuperFamilySSF486952.4E-691173IPR011031Multihaem cytochrome
PfamPF069436.5E-1091115IPR005735Zinc finger, LSD1-type
Gene3DG3DSA:3.90.10.108.0E-5106189No hitNo description
TIGRFAMsTIGR010531.1E-13127156IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-11130154IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.6E-10165194IPR005735Zinc finger, LSD1-type
PfamPF069435.2E-11168192IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MALMEIVGFR RLLQLSILPF WFPLKGNMNK NPSFLTQIGD GSANLCLMLK EDTVLGRRIR  60
HKPEMPVPLV PYPTPPVPFT PPNGGQSQLV CSGCRNLLLY PLGATSVCCA VCSAVTAVPP  120
PGTEMAQLIC GGCHTLLMFI RGATSVQCSC CHTVNLALEA NQVAHVNCGS CHMLLMYQYG  180
ARSVKCAVCS FVTSVGALPS TEQKPSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009392782.11e-113PREDICTED: protein LSD1-like
SwissprotQ0J7V92e-80LSD1_ORYSJ; Protein LSD1
TrEMBLM0SIC21e-150M0SIC2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr3P27560_0011e-150(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.38e-59lsd one like 1